MODULE · GWAS

Genome-wide association

Manhattan + QQ plots, Bonferroni and Benjamini–Hochberg FDR, with LD-pruned independent hits. MLM corrects for population structure via principal components; permutation gives empirical FWER thresholds.

Genotype × phenotype CSV

Phenotype column

Method

FDR α

Structure PCs (covariates)

0 = uncorrected. 3–10 recommended for structured panels (controls inflated p-values from ancestry).

Upload a CSV with sample_id, marker dosage columns (0/1/2), and one phenotype column. Or click the sample button on the left.