MODULE · GENOMIC SELECTION
Predict breeding values from DNA
Fit GBLUP or BayesB on phenotype + genotype. Estimate variance components, heritability and per-individual GEBVs. Cross-validate prediction accuracy with k-fold or leave-one-environment-out CV.
Genotype × phenotype CSV
Fit a model to get GEBVs + marker effects, or cross-validate to estimate prediction accuracy (r between predicted and observed phenotypes).